rs48818159 SNP Detail

Summary

• ID
  rs48818159
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27283032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGACCCTG GAATGTGGTA
  TTAAGAAGCT TCAGAGGCCC CTCAGCGGTT TCCTCTACCT ATAGTTATTC AAAGGCCTCG
  AGAAGGAAGG CAGGCAGGCT TGCCTCACTT GGCACACGGA GGATCTAGCC TCAGCGGGCT
  CTTGTTTACC TGCCCTCAAG ACTTCAGTAG CAACAATGGG CAGCACACCC TGAGCTCTTG
  Y
  CACACACCCT TCTCTACCCC AGCAGTCCCT TGACTCCAGT GACACGGGTG TGTTATATGT
  GAGTCGAGGC TTATCGTAGC ACCCAGAAAG GTAGAAAAAA TATGATCAAG ATTTTGAGAA
  AGAGCTAAAA CTCAGAAACA ATTGCCTTCT CCTTACTTTC CCCACTGGGC TGACTCTAGA
  TAATTGGCAT TCAGATGTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60380262	NES15882845	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C	C	T	T	C	C	C	C	C	C	C	C
ss134703046	ENSMUSSNP6020362	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48818159					SNP	C	C	T	T	C	C	T	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60380262	NES15882845	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27283032 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nceh1	neutral cholesterol ester hydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr574372	regulatory region 574372			within coordinates
Rr574373	regulatory region 574373			198 bp proximal
Rr574374	regulatory region 574374			221 bp proximal
Tssr28616	transcription start site region 28616			1581 bp downstream