rs48817607 SNP Detail

Summary

• ID
  rs48817607
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129815364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGAGCTA CTGCGTGGCA
  GAGCTGGGCA GAAGCCAGCA TGTGAGTTAC AGTATCCTTG CCCCAAAAGT TTGTCCTCTT
  GGGCCATCTG ACCCCTGTAT GCAGGCTAGG GGAGAGGCTG GAGTCATCCT ACAAGTCTCT
  GCAGAGAGAA GAGCCTCCTC CTCCTGTAGC ACCAAGGGTG TGGAGAGCGA TACCAGGCTT
  T
  AGAAGGACTT GCTCCCCAGG GCTGCAGCTC TATTTTTAGC CTCAAATCCA TCAATAAATG
  GAGTCTGGTG GAGCCAGAGA CTCTTGGCTG CCTGATACTA AGAGCAAGAG GATCATTTAT
  TAAGCACTTC CCGTGCAGGG CATCGTGTGG CGTCTAACTG GACTGTGAGC TTCGGTTGGC
  ACACGACTGC CATCGTCACC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147454213	ENSMUSSNP6866994	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48817607					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129815364 () rs orientation: forward

Symbol	Name	Function Class
Rr600382	regulatory region 600382	80 bp distal
Rr600383	regulatory region 600383	1968 bp proximal