rs48817198 SNP Detail

Summary

• ID
  rs48817198
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:18817953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTAAGTGC GGTGTCCTTT
  GAGGCCATAA GAAAGCATTG GAATCCCTAG AGCTGGAGTT AAAGGAGGTT GAGAGTCACC
  CAGTGTGGGA GCCAGCAACC AAACGTGAGT CCTCTGATGT TGTGGTTTTA ATGACAATGG
  TATCTCTTCC TGTATGCTAA GAAAGAGATA GCTGATTTTT CCATGAGTGG GTGAACAGGG
  Y
  GTGGGGAGTA GAGATTGCTT TAATGAGACT GTTATGTTTG AATAATTGGA ATAATCATCA
  TCAGTTGCTG GAACTGTTTG GGAAGAATTG GAGGAGTGGT GCTGGTGGTG GGCATTCTCA
  GGTAGTGCTC TGTCTGTCTG TCCATCTGAT GCTTGTGGAT TAGGAGGTAA GCTCTCAGCT
  AATGTGCCAG TGCCATACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133041728	ENSMUSSNP6568219	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48817198					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18817953 () rs orientation: forward

Symbol	Name	Function Class
Rr626951	regulatory region 626951	1472 bp proximal
Rr626952	regulatory region 626952	1598 bp proximal