rs48815446 SNP Detail

Summary

• ID
  rs48815446
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:97965006 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTTTTGT TTTCTCAATA
  CTTCAAAATA CAAAATCCAT CTTCAATGGG AAGGTTTGGG GGCAAACCCC TATCATGGAG
  AAAGGCCCCG GGCTTGGTCA ACTTGGTCCT TGGTAGTCTT TCTTTATTCA AGTACTCTTT
  ATTTTTGTTT GCAGCCAGCT TCCACTCTTC TCCTTTATAC CAGGATTTGT CTCCATGTTC
  M
  CTTGTTTTTT CTTTCTTTCT TTTTTGTCAA GGATACTTTG GTATGGATCA TGTAGAAAAC
  AAGGTTATCT ATAGCAGACC TAGAGCTCTG GGCTCATGGT TTCTCTTGTA ACATCAGGAA
  TGTGCCTAGA AAAGATGTTC AGATTCCGGG ATGCCTCTCT CTCAGGCTTT CCCCAGGTCA
  CTTGAGAAAG CTAACTTTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133422701	ENSMUSSNP1415842	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48815446					SNP	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97965006 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	Intron
Rr635251	regulatory region 635251	1425 bp distal