rs48814941 SNP Detail

Summary

• ID
  rs48814941
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116016179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATTCCTGG AAATGCTGTC
  TAGATAAAAT TGCATACACA GACTAAGAGA ATAAGTTGTC TTGCCTTCGA GCTGACTTCA
  CAGTCTAGTG ACAAAGAGAT AATACTTTCT TCCAACTGTC ATCTCCACTT GTGAAAAGTG
  GTCCTGCGGT CTGGAATGTT CCCTTGCCCC CGGACACCAT AAAGAGGCTG GCAGAGGAGT
  Y
  TGGTATGACT GGTATAAAGT CCTTATTGCA CCAGCATCTA AACACTCTGT AAACACTACT
  TTCTCTCTCT GCTCCTGTCA TTGTTCCAAT CACAATGGCC TTGCTTTGCC CGCACACCTG
  CTGGCCCATT TGCGACAGCC CTGCCTTGTC TCAGGGGCTT TCTCCAAGCT CCTCCGGCTG
  GCCGTTCATT TGCATATCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60437877	NES15932731	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48814941					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60437877	NES15932731	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116016179 () rs orientation: forward

Symbol	Name	Function Class
Rr583673	regulatory region 583673	343 bp distal
Rr583674	regulatory region 583674	within coordinates