rs48811718 SNP Detail

Summary

• ID
  rs48811718
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127622594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCATTTCA AAGAAAAAGG
  ATGACCTTAC CAAAAGACAA TTATTATACA CTTCCCAAGC AGCTGACTTT TCATCTTACA
  TTAAGAATTT ATAACTTAAT GCTCTATATC TGAACAAACA CAGCCAACGG TGAAAGCCTG
  GGGCGTGGAG AAACCATGAT ATAGTTGCCT AAAACAAACT GCCATGTTTA AATAAATCAA
  S
  CAAACTAATC ACAAGTAAAA GACACTAAGG CTGGCTTTAC TCAGGTCTTT TGAATCCTGT
  GTTTCACAAA GGCACAAGAG TTGCTTTCCT AAATTTAAGG AAAAAGAAGT CAGTATTTCA
  CTGACTTGAT TTCCAGCTCT GTGTGACATG AGCCAAGCCA ACAGAGAGCG AGGTAATAAC
  ATGGTAAGGA ACAGACTCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135872273	ENSMUSSNP6706198	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320957246	CHEV_3_127531863	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48811718					SNP	G	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127622594 () rs orientation: forward

Symbol	Name	Function Class
Ap1ar	adaptor-related protein complex 1 associated regulatory protein	Intron
Gm43654	predicted gene 43654	610 bp downstream
Rr584870	regulatory region 584870	1429 bp distal
Rr584871	regulatory region 584871	1274 bp proximal
Rr584872	regulatory region 584872	1864 bp proximal