rs48808964 SNP Detail

Summary

• ID
  rs48808964
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:172316262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGT TGAGTAACTT GTTCAAAGGA
  R
  CATGTGGCTG AGCTGGGCTT GTGCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss120011482	PARCsnp_1.19819	PARC_SEQ	INBRED	f	SNP	A	G
ss120014486	PARCsnp_1.09855	PARC_SEQ	INBRED	f	SNP	A	G
ss146193505	ENSMUSSNP3340973	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss320125681	CHEV_1_174418826	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs48808964					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172316262 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1051	CpG island 1051			1818 bp proximal
Igsf9	immunoglobulin superfamily, member 9			Intron
				Noncoding-Transcript-Variant
Rr423586	regulatory region 423586			1802 bp distal
Rr423587	regulatory region 423587			within coordinates
Rr423588	regulatory region 423588			992 bp proximal
Rr423589	regulatory region 423589			1872 bp proximal