rs48808370 SNP Detail

Summary

• ID
  rs48808370
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:114441954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACAAACAA ACATATATGC
  AGAGGGCTTA GGTCAGACTC AAGGAATCTT CCGGATTCTT AAATTAGTCT TTTGAGTCCC
  TGTTATCTCA GGTAAATTGA TACTGTTGGT TTTCTTGTGG TATCTTTGAC TCCTGACTTC
  AGCAATGTTT CCTCACAGTC TGTTTCACTC ATTGTCCAAG TTCCACCTAA AGTTTTTTTC
  Y
  CAGTCTGACA CTTGTAGTGA CTCCTTCTCA AGAAAGAAAA GCTTTTCTAT TAGTAATTAA
  TCTATGTGCA TAGAAATTAA TAAAAAGTAT CATTACTAAA TATATAAACA CACACTACAC
  ATACACACAC AAACAAGCTA AAACCCAAAC ATTTAACTTA TTTCCCTACA CCTTAGCATT
  ATACATTATA TACATATGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss138784496	ENSMUSSNP2866112	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss324184734	CHEV_12_115716545	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48808370					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:114441954 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighv10-1	immunoglobulin heavy variable 10-1	673 bp downstream
Tssr3975	transcription start site region 3975	1157 bp downstream
Tssr118082	transcription start site region 118082	1172 bp downstream