rs48803686 SNP Detail

Summary

• ID
  rs48803686
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:13152010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATTAGATT GACAGTTAGC
  CAGGGAAACT GCACTAACTT TTGACAGGAA TAAAGGGACA AAATCTAGGA ACATGCCTTT
  AATAGCAGTA TACCTGAAGG TGAGGCAGGA GCCTCACCTG GAGTTCAAAG CCAGCTTGTG
  GACTACATTG TAAAAACCCT GTCTCAAATA GATAAGCTAA AGTGGATAGA AGGAGCACAT
  M
  GGCAAGTACT CTGCCTTAAA GAGATTCTTT TTAGGATGTC ATTTATATGG CTTGGTTATA
  TTCTTATTTC TCAATGGCAT CATAAAATAT AGTCTCAACT ACCTGGAACA CTGTCTCTTT
  TAATTGATCA ACATTTCCCA ATTCACAGAA TAATGGAGAA AATTCTGTCT AACCATATAC
  TACTCAAGGC AATGTAAACT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
ss133003216	ENSMUSSNP6710221	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		C
ss321747176	CHEV_6_13102011	CHEVERUD	SCREENING_POP	f	SNP			A		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
rs48803686					SNP	A	A	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:13152010 () rs orientation: forward

Symbol	Name	Function Class
Rr626556	regulatory region 626556	189 bp proximal
Rr626557	regulatory region 626557	434 bp proximal