rs48802874 SNP Detail

Summary

• ID
  rs48802874
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:97857707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCAAGGAG GACAGGCTGT
  CTGGGCTGCA AGCCCAGGCA GCTGCATGTC TGCTTCCTAG TAGAGGGATT ACAGTATGTG
  TCACCACACC AGGCTTCTAG GGACGGAACT CTTGGGTCCT TATGCTTACA AGCTGAGCCC
  TGCCGTACTT TTCTCATTTT TGGAGTCTTC CTGACTATTT CAGCTTTGAT GAGGTCTCTC
  Y
  TCTGTGGCAG GTTGTAAGCT GAACATCTCT CACCCCTCTG AGAACTCTGA GAGGACCTCC
  TTCTTTGGTT AGCTGTTCTA CCTCTAATAG GTGTTCTTTC CCCAGCCCTA GAAAGCCCAC
  CTGCTTGCTA TCTAGCTTAA GATTTCAGGG GATCTCTGTG AAGCTTTCCA GATCTTTTTA
  TTGTTACACT AGAGAGAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60915316	NES16222699	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48802874					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60915316	NES16222699	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97857707 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	Intron
Rr635233	regulatory region 635233	within coordinates
Rr635234	regulatory region 635234	1185 bp proximal
Tssr57900	transcription start site region 57900	227 bp downstream