rs48802622 SNP Detail

Summary

• ID
  rs48802622
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116015063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGGCCAA GCCAAAACCT
  AAAGCAGGAT GCATTTGCCA AAAATAAGAT GCATTCCTAG CTGGACAGTG GTTAGAAACG
  GGCTCGAGCT GCATAGACAT AAAACACTGG CTGCTTGTTT GTTTACACCC TCTAGTCTTC
  TGTGTTCCTT CCCAGACTCT GAAGGGAGAG TTAACATAGA AAACTAGTTC ACCTTTACCG
  Y
  CAAATATTTC CTTGGTAAAC TCGCTTCAGT CACCCAAAGA GAGGGAAAAA AATCACCATT
  CATCAATATG GCTAACTCTT GAAACTCTGC CTCCCGCCAT CTTTAGAGGA AAAGGATGAA
  GGAAAACAGC TGCTTCATAA CTTTCCCCTG GAAAAACCAC AGGAGTTATG TAACCAATGT
  TTTTCAGCAC TAGAAAACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60437883	NES15932720	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48802622					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60437883	NES15932720	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116015063 () rs orientation: forward

Symbol	Name	Function Class
Rr583673	regulatory region 583673	within coordinates
Rr583674	regulatory region 583674	1097 bp proximal