rs48801085 SNP Detail

Summary

• ID
  rs48801085
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:97897937 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTGCTAT TTAAGACAAG
  ATTTTCCACT TGACTCCCAG TTTTATGTTC ATATAATAAA AACTATAAAT TATAAACATA
  ACTGACACAC AGAACCAGAG CAGAAGGCTT CTGCTAGAAT TTAGTTGGCA GCGGAGAATG
  TTGTGGGTCT TACGTATCCA CTAGAATTAT TGAATCTCAC ACACACATCT AGTCCTTTCT
  K
  TACTTTTATT TTATTTTTAT GTGTATAAAG GTTTTGCATA CACATGTGTA TTTGCTCTAA
  ATTGTCTGTG ATGCCCACGG CACCTAGAAA AGGGCGCTGA ATCTGCAAAA GCAGAGTTAT
  GGATGGCTGT GAGCTTCTAT GTGCATACTG AGGACCTAAG AGTGGTTCCT TTGCAAGAGC
  ACGGGGTGTT CCTGACTACT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60915040	NES16221687	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48801085					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60915040	NES16221687	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97897937 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	Intron
Rr635240	regulatory region 635240	1286 bp distal
Tssr57911	transcription start site region 57911	1775 bp upstream