rs48800552 SNP Detail

Summary

• ID
  rs48800552
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:14295936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGAGGTTG TTCTGATCTT
  GCTGAATTTA GATGGCATAC CGGGACTGGA GAAGCCTGAA ACATAGCTTT AGCAGGACAA
  GAGACAGTTG AGAATAGATA CTTAGATGTG GCCTTTATAT TCTGCATTCA GTCTCATCGA
  CTGTAAAAGG ACACTGAGGT ATGGGATCAC CTCCTTCCAA ACCTCCCTCA TTGCTGCCAT
  M
  AGGTGGTCAC CATGTGAGAT ATATCAAATA TGAGTCTTTC TTTTTTTTTT TTTTTTTTTT
  TAAGATTTAT TTATTATTAT ATGTAAGTAC ACTGTAGCTG TCTTCAGATA TACCAGAAGA
  GGGCATCAGA TCTCGTTACG GATGGTTATG AGCCACCATG TGGTTGCTGG GATTTGAACT
  CTGGACCTTT GGAAGAGCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62078204	NES17156067	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48800552					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62078204	NES17156067	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14295936 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6157	CpG island 6157	399 bp proximal
Pdhb	pyruvate dehydrogenase (lipoamide) beta	812 bp upstream
Rr389295	regulatory region 389295	within coordinates
Rr487855	regulatory region 487855	897 bp distal
Rr487856	regulatory region 487856	108 bp distal
Rr487857	regulatory region 487857	within coordinates
Rr487858	regulatory region 487858	322 bp proximal
Tssr127398	transcription start site region 127398	860 bp upstream
Tssr127399	transcription start site region 127399	834 bp upstream