rs48798531 SNP Detail

Summary

• ID
  rs48798531
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153299028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCCCCTC TGGAACAAAA
  CATGCTTCCT CCCATGAAAG TTGGTGACCA CAAGCTGTGT CACTAAGTCT TGGCACGCCT
  TCAGGAAGAA GCCAGGGCTT AGGCCCTGAT AACACGGGTT TACCCACCAG CATCTATGTA
  AAGAACCTGG CCCATCATTA TGCAGTCAAG ACAAGGGGCC TGTCTCTGAG GATGGGTTAG
  S
  TTCTGATGGT CCAGGTGGGG CCCTGCAGAG GACTCAAACA AGGAAGCTTT TCCATGTAAA
  TTTGATTGAC TTGCTATTGT TGTTTATATA CTCTGTCTTC CATGGATCCT TTGGGAAGCA
  GCTAATGAGA CAGCAACCAC AGGCCTGATA AATTAGTCCC AGAAACTCTA GTTTAAAAAC
  AAGACTGGCT ACTCGATTCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136109418	ENSMUSSNP2990295	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48798531					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153299028 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm32721	predicted gene, 32721			within coordinates
Rr587708	regulatory region 587708			1362 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant