rs48786687 SNP Detail

Summary

• ID
  rs48786687
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:90401539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGTCTCTG CTTCCCATCC TTGTCTGTCT TGGCAACACC
  ATCTTCTGTG TTATTTATCA ATAGTGGCGT CTCACCTGGG CTCTGACTTT AAGTTCTCTC
  R
  TTTGTGACAG ACTTAGTGGC TGCCTGTATA TAATTCAAGT CCCTTGCTCA CTGGGGAGCA
  GGGTTCTTTA CAGTTTGTCT TTTACCCTAT CAAGGATATC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss60906963	NES15948671	PERLEGEN	MM_PANEL2	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs48786687					SNP	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60906963	NES15948671	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:90401539 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cfap100	cilia and flagella associated protein 100			Intron
				Noncoding-Transcript-Variant
Rr634193	regulatory region 634193			1227 bp distal
Rr634194	regulatory region 634194			1848 bp distal
Rr634195	regulatory region 634195			1715 bp distal