rs48786186 SNP Detail

Summary

• ID
  rs48786186
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27165144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TTCTCAAATA AGACATTAAA TGAGGGGCTT TAAATTATTT
  TACTATGTGT GAAGCCTTAA ACTCAGAAAA GAGCTTACTG ATGTCACCAA ATTTTTCAAT
  R
  CATAAGCAAA TCTTAAGGCA AAAAAATTTC AACAAACTGG AATAATTTTG TGCTGTATCA
  GAACATAGGT AAATGTTTGC TGCCATCTTG TGGATAATTA T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss134702107	ENSMUSSNP4504342	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48786186					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27165144 () rs orientation: forward

Symbol	Name	Function Class
Ect2	ect2 oncogene	Intron
Gm25152	predicted gene, 25152	1900 bp downstream
Rr574345	regulatory region 574345	1958 bp distal
Rr574346	regulatory region 574346	within coordinates
Rr574347	regulatory region 574347	77 bp proximal