rs48785461 SNP Detail

Summary

• ID
  rs48785461
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:125509512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGACCAGGT GCTACAGCGG CAGCCTGGAA CAGACGCTGT
  GGGGCCCCTC CTGGCCCGTT TCATCATCTT CCAAATGAGC TTGCATTTTC TAATGGTTTT
  W
  AAATTCTATA ACTGTAAATA CCTGGAGGCA TGGGGGTGCA GACAGTGCAG AATACTTAAA
  AGGAAAGAAC AAATGTCAGG AGAAAATATT TGAAGTATC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147484313	ENSMUSSNP230406	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48785461					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125509512 () rs orientation: forward

Symbol	Name	Function Class
D2Mit105	DNA segment, Chr 2, Massachusetts Institute of Technology 105	1772 bp distal
Rr397269	regulatory region 397269	within coordinates
Rr564256	regulatory region 564256	1797 bp distal
Rr564257	regulatory region 564257	554 bp distal
Rr564258	regulatory region 564258	within coordinates
Rr564259	regulatory region 564259	355 bp distal
Rr564260	regulatory region 564260	235 bp proximal
Shc4	SHC (Src homology 2 domain containing) family, member 4	Intron