rs48782426 SNP Detail

Summary

• ID
  rs48782426
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48172238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGGGTGA CTTGGAGGAG
  GGAAGGGTAA AGAGATGGTC CAGGGAAGAT GGAGGCCTAG CCCGTGCAAG CTCAGAATCC
  TGTTCTGTCA TCCATTCACC TTAAAAAGCA ATGAAGCCAT CCTATGTGAG GTTCATCCTA
  GAACCTCTCA GTCCAAGGCC GTGACCCCTT CCCTCGTCAT CCGAGGGTCT GCTCTCTCTC
  W
  CACATTTGCG GCTGAAATCT CTGGCACAGA GCCTCAGCTC TAGATCTCCC TTCCCCACAC
  TTGCTCCCGA GCTGTCTTCT GGCATAGTCC TTCTGGGAGC CGCTCTGTTT TAGGGAGCAT
  TCTCAGGACT CTGACACTCT ATGGGACCCT GCCTTGGTCT TGGCTAGCCC TCTCTCCTGG
  GTCTGTCTTT TGAGTCTTTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62761334	NES17343728	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48782426					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62761334	NES17343728	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48172238 () rs orientation: forward

Symbol	Name	Function Class
Rr392692	regulatory region 392692	542 bp upstream
Rr528160	regulatory region 528160	1790 bp proximal
Tssr145062	transcription start site region 145062	962 bp upstream