rs48781850 SNP Detail

Summary

• ID
  rs48781850
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59852177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCTGTAAA TGTGATTTTG
  CTGGTATTTC CTCAGATGAA GTGATGAGAG GAGAGCCATA CTTGAGCTTT ATGAATACAT
  GGCTTGGGTT GAGCCCAGAA CGTTTTTATC TAACTATCCC TAGGCCTAGA AGCTTCTAGC
  CTCTATACAA TCTAAACTTC TGCAAGCCTG GACCTTGAAG GCTTCCCCTT CCAGCCTCTG
  Y
  CTGCTATCGT AGGCCTAGAA TGTTTCAGCC TCTGAGACTT ACACTGAATA AACTCACCCT
  TTCTAGCTCT TTCTGAACTC TGGATGGCTG GTCAACTCAG CTATTCTGAC TCAAACTCCT
  CTCCAAGCTG ACTGATTCAA AGGCTTCTCT TGACTTCTGA CTGAATTGCT CTGCTTGAAA
  AGACTTGCCT CTGAACTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146403660	ENSMUSSNP6350407	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48781850					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59852177 () rs orientation: forward

Symbol	Name	Function Class
Rr376573	regulatory region 376573	1004 bp downstream
Rr593160	regulatory region 593160	1482 bp distal
Rr593161	regulatory region 593161	1740 bp distal
Rr593162	regulatory region 593162	527 bp distal
Snx30	sorting nexin family member 30	Intron