rs48781270 SNP Detail

Summary

• ID
  rs48781270
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:25708054 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGAAAGTA GTCGGTGCTC
  TTAACCTCTG AGCCATATCT CCAGCCTGAG ATGATATTTA TATATATTTT GTATAACAGC
  AAGAGTGAAC ACTGCCCACT TACCAGTGTT GTCTAGCTAC AAATTGACTA TATTAATAAA
  ATGGTTACCT TTGCAAAAAT ATTGCCTTCT TCAACTACAT TCTGATGTGT TAGTGTTGTG
  Y
  GTCATACTTA TAGAGCCTTT GAAGTTTACA TTGTTGAAAA CCCCTGTCAC CAATCTCCAA
  GTAGAAGCAC TATGTTATTC TTTTTAGCAA GTCTATGGCA TTTCTAAGTT TCTACAATGA
  GGTTAAAATG AAAAATAAAA ATTTAAAAAA ACAAGTCAAT AGCAACTTGG GATAGAATGA
  ACTGCATAAT TTGTATTGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60873602	NES15975960	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48781270					SNP	T	T	T	T	T	C	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60873602	NES15975960	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:25708054 () rs orientation: forward

Symbol	Name	Function Class
Rr627304	regulatory region 627304	241 bp distal
Rr627305	regulatory region 627305	1369 bp proximal