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rs48781270 SNP Detail
Summary
  • ID
    rs48781270
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr6:25708054 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGGGAAAGTA GTCGGTGCTC
    TTAACCTCTG AGCCATATCT CCAGCCTGAG ATGATATTTA TATATATTTT GTATAACAGC
    AAGAGTGAAC ACTGCCCACT TACCAGTGTT GTCTAGCTAC AAATTGACTA TATTAATAAA
    ATGGTTACCT TTGCAAAAAT ATTGCCTTCT TCAACTACAT TCTGATGTGT TAGTGTTGTG
    Y
    GTCATACTTA TAGAGCCTTT GAAGTTTACA TTGTTGAAAA CCCCTGTCAC CAATCTCCAA
    GTAGAAGCAC TATGTTATTC TTTTTAGCAA GTCTATGGCA TTTCTAAGTT TCTACAATGA
    GGTTAAAATG AAAAATAAAA ATTTAAAAAA ACAAGTCAAT AGCAACTTGG GATAGAATGA
    ACTGCATAAT TTGTATTGTA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
CAST/EiJ
DBA/2J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss60873602 NES15975960 PERLEGEN MM_PANEL2 f SNP T T T T T C T C T T T T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
CAST/EiJ
DBA/2J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs48781270 SNP T T T T T C T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss60873602 NES15975960 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:25708054 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr627304 regulatory region 627304 241 bp distal
Rr627305 regulatory region 627305 1369 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory