rs48781047 SNP Detail

Summary

• ID
  rs48781047
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8104579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCATTCCT TGGAAGGGAC
  CCTAAACTGT ACACGAGTGA ATAAATAGAA CAGAACATAC AGGTAAGCAA CTGAGCATGC
  ATGCAATCAT CCTCTCTTTG TCCTTGACTG TGGATGTGAT GTGACCAGCT CCCTCAAGCT
  CCTGCTGCTA CTTCCCTGCT AGGATGTATT ATAACCTGAA ATGTTGAGCT AAAAGAAGCT
  Y
  TGTTCTGTAA GTTGCTTTTT GTCAGGATAT TTTATTACTG AAACAGAAAT AAAACCAAAA
  CACCATAATG TAACCACATA TTTCCCATCA TTGCAAATTA GCTACCTAAA CAAAACTCTC
  ATTAATAGCC TAGTGGGAAA ATAAAGTGTC CCAATTGTTA CCCAGAATGC AGCCTTTTAT
  ACTCGGTCCT AAAGCATCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss132961633	ENSMUSSNP4561046	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48781047					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8104579 () rs orientation: forward

Symbol	Name	Function Class
Col28a1	collagen, type XXVIII, alpha 1	Intron
D6Mit348	DNA segment, Chr 6, Massachusetts Institute of Technology 348	528 bp proximal
Rr626348	regulatory region 626348	349 bp proximal
Rr626349	regulatory region 626349	1227 bp proximal