rs48780059 SNP Detail

Summary

• ID
  rs48780059
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:132738678 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACCCCAGA AAGTCGCAGC
  CCTTTTGGCT CATCCTCTGA TGCCCGATTC CACTCATTTT ATTCTCAGAC CCCGCCCCTG
  CGCTACCACC CGCAACCTTG GCGCAGCCAG AGCCCCGAGT AGGGGCCTCG GAACGCCCGG
  AATGTTCCTA ACCCTTGAGG AGGATCAGCA GTCCTAGATA AAACGGGATT CATCCGGGCC
  R
  GGGATACTCC GGCATAGGGT CCGCTCCGGG CCGCGCCGTC GGAGCAGCCG GAGTGGCCCC
  GCCCGCACAG CGCGCGGAGC GGCCGAACAG GGACTACAAG TCCCGGCGTG CTCTGCGCGC
  GCTCCCCCCT GGGGTTCCGG ATGGTGAGCA GCGAAGGTAA GGCGAGCTCG CAGAGGCAAC
  GGCGGCGGCG GCGGAGACGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	MSM/Ms	SM/J
ss147480660	ENSMUSSNP1745337	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
ss321338140	CHEV_4_132567282	CHEVERUD	SCREENING_POP	f	SNP			A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	MSM/Ms	SM/J
rs48780059					SNP	A	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132738678 () rs orientation: forward

Symbol	Name	Function Class
Ahdc1	AT hook, DNA binding motif, containing 1	Noncoding-Transcript-Variant
Rr601152	regulatory region 601152	1352 bp distal
Rr601154	regulatory region 601154	within coordinates
Rr601155	regulatory region 601155	302 bp proximal
Rr601156	regulatory region 601156	347 bp proximal
Rr601157	regulatory region 601157	848 bp proximal
Tssr39436	transcription start site region 39436	116 bp upstream
Tssr39437	transcription start site region 39437	151 bp upstream
Tssr39438	transcription start site region 39438	427 bp upstream