About   Help   FAQ
rs48778524 SNP Detail
Summary
  • ID
    rs48778524
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:124381209 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CAAGCATTTG TAAAACAGTA
    CTCAGAAAAA AAAAATCATT GACCTAAAAA CACATAAAAT CAAAATGAAA ATTAAGAAAT
    CAAGGAAAAC ATATAAAAAT TTCCCTTATT TTTCTGAGAA TAAGCAGACT ACCAAAGTCA
    CACAGGAATC TAAGGCAAAA TAAGAACTCA GTAAAAAAAT GTTACTTGTA TACATATTTC
    Y
    GCTGCAGGCT AGAATTCTCC AGAATTCTCG TAAAATAAAG ATTCCTCACT GGAGACTGAG
    GAAAGGAATG TAGATAAGGT GGTGGTGTCT CTTTGGATCC AATAACTCAA AGGATTTTGC
    ATATTCATTT ATATGTGTAG CTATAAAATC AGAGAATACT GTTTCAAGGC TGCCATCTTC
    TGGATGATGC ATACCATTAC                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
DBA/2J
LG/J
SM/J
ss135790741 ENSMUSSNP5066393 ENSEMBL ENSEMBL_Sanger f SNP T
ss320929401 CHEV_3_124290478 CHEVERUD SCREENING_POP f SNP T C
SNP Consensus Information
SNP Consensus Type
DBA/2J
LG/J
SM/J
rs48778524 SNP T T C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:124381209 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm9379 predicted gene 9379 968 bp downstream
Rr584593 regulatory region 584593 1592 bp distal
Rr584594 regulatory region 584594 55 bp proximal
Rr584595 regulatory region 584595 167 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
03/18/2025
MGI 6.24
The Jackson Laboratory