rs48776467 SNP Detail

Summary

• ID
  rs48776467
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:67513216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACCAGGGC GTCCCACCTT
  TCCTAGTGCA CCTCAGGAGT TTCTCCAGAG GCCCAGCTCC CGACTCTCAC GTCCCTACAA
  TTCCAGACCC CATAATCCCG TACCTTCTTT TTCTCTCAAC TCCTATCTTC AGTTTCGTTC
  CTTCCCTCTC TTCTTGCTCC AGAACACCTT ATAACACAGT TAAACAGTTC ACTGACATAA
  R
  CCTGATCACA TGCCTTTGTC TGTAAACCCT ATTCTAGGTG AGATGGTGCA GCTGAGGCAG
  GGAGACCTGA AGTCACCCAG CCACTGATTT CCCAGGATTC TCCCTGGGCT TTCTGCTTGG
  CTTTAAGAAC TATAAATGAG TATTTACAAA AACAAAATGT TGCAGCATCT GAAGACAGGC
  TAGTTAAAAC AATTCTATTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60894256	NES15959617	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48776467					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60894256	NES15959617	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67513216 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17512	CpG island 17512	356 bp distal
Gm42889	predicted gene 42889	within coordinates
Rr631668	regulatory region 631668	1420 bp distal
Rr631669	regulatory region 631669	977 bp distal
Rr631670	regulatory region 631670	426 bp distal
Rr631671	regulatory region 631671	156 bp distal
Rr631672	regulatory region 631672	253 bp distal
Tacstd2	tumor-associated calcium signal transducer 2	436 bp upstream
Tssr1872	transcription start site region 1872	1451 bp upstream
Tssr61255	transcription start site region 61255	1487 bp upstream
Tssr61256	transcription start site region 61256	1006 bp upstream
Tssr61257	transcription start site region 61257	535 bp upstream
Tssr61258	transcription start site region 61258	430 bp upstream
Tssr61259	transcription start site region 61259	362 bp upstream