rs48776332 SNP Detail

Summary

• ID
  rs48776332
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150019284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAG CTCCTTCTAT CTTATAGCAC
  Y
  GTGCTCCACA GACATGTTAC ACAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148043515	ENSMUSSNP6695303	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss321427315	CHEV_4_149308936	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48776332					SNP	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150019284 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr377412	regulatory region 377412			1553 bp upstream
Rr605111	regulatory region 605111			637 bp distal
Spsb1	splA/ryanodine receptor domain and SOCS box containing 1			Intron
				Noncoding-Transcript-Variant