rs48775359 SNP Detail

Summary

• ID
  rs48775359
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130732285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTACCTCTAT TTTCACCTGC TTTGTTTCTA TGTGGCAAAA
  CATCTCTACC CAGAATGCCC CCAAATCCAT CCCCATACCA GTTGACCTAA GGTAAAAATA
  Y
  CAAAATGACC AAAAAGGTCA ACAGCAGGAG AAAAAGAAGC AGGCCTGAAC CTCCCCCAAC
  ATGGTTTCTC CTCATGGGAC ATGAAGTGTT AGAAAGTCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135902559	ENSMUSSNP1292682	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48775359					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130732285 () rs orientation: forward

Symbol	Name	Function Class
2010110G14Rik	RIKEN cDNA 2010110G14 gene	1299 bp upstream
Gm64594	predicted gene, 64594	1730 bp downstream
Rr367556	regulatory region 367556	1394 bp downstream
Rr585240	regulatory region 585240	1893 bp distal
Rr585241	regulatory region 585241	1346 bp distal
Rr585242	regulatory region 585242	1742 bp proximal