rs48771992 SNP Detail

Summary

• ID
  rs48771992
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55169401 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATGT TCCACTCTCA TTTGTGCAGT
  R
  TAGACAGTCA CCCACAGCTT CTTCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss62402341	NES17240450	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	A	G	G		A	G	G		G
ss139573304	ENSMUSSNP6229776	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G				G
ss324640924	CHEV_14_55550781	CHEVERUD	SCREENING_POP	f	SNP									G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48771992					SNP	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62402341	NES17240450	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55169401 () rs orientation: forward

Symbol	Name	Function Class
Il25	interleukin 25	751 bp upstream
Rr389680	regulatory region 389680	1046 bp downstream
Rr492369	regulatory region 492369	1182 bp distal
Tssr125681	transcription start site region 125681	1100 bp upstream