rs48771824 SNP Detail

Summary

• ID
  rs48771824
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100824348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGAGCCT GTTCAACCCC
  TTCCTTCCCT GTCTCAGCCC AATTTTAATT TTTTTATTAT AAAGAGCTAA ACAAAGTTAT
  TGGTGCTTCT ATTTTCATAC AAGCTAATCC CACTAGATGG CACTAAAGAG TCGCATGTTA
  GGAATCGGGC CGTGCTAACC TCAGAAACAA AAATAAGCTA TCTGAACTAG CAATGCATTT
  Y
  CCCGATGATT TGTACTGATA TTATGATTTT CTAGATATGA ACCACAAGTC TCAACCTCTT
  ATTCGTTATA GGATACGGTG TGTTTCAGAC CCTGTGGCCC ATGTTAGCAA TGCAGCAGTG
  AGACAGGAGC CCACGTGGTT AGAGGTTTGA TGAACAGCAT TGTCCAGAGG ATCTGAGTTC
  AGTTCCCAGC ACCTACTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320850248	CHEV_3_100720955	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48771824					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100824348 () rs orientation: forward

Symbol	Name	Function Class
Gm40108	predicted gene, 40108	1812 bp downstream
Rr581925	regulatory region 581925	within coordinates
Rr581926	regulatory region 581926	74 bp distal