rs48771809 SNP Detail

Summary

• ID
  rs48771809
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:88725992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAAGTCCC TTCTTTTTTA
  CGTATTATCA GCAGAGCGTC CTACCCCTTT GGAGAAGTGA TTAGCATGCA TCAATATCAA
  TCTCACTGGG CCCTTAGAGA GAACACAGAC GTAGGTAAAG CATCATGAGA GATTATTAGG
  ATAGCCCACT GACACCTGGA GACTGTGTAG CACCCACAAG CACCAAGGAG ATCTGCAGCA
  S
  GTTGGAACTG AGGAGTTAGT GTGGCTTCTG AGGAGGATGG GAGTTTTCAC TTCAGTTGGG
  ACCAGCCTGG TCTCTGCCTG TGGTCAGAGA ACAACTTGTT CTAGCCCTGT TACTTGATCA
  GGACTAGGGT TTACATAGGG AAGGACTTTG TCTCTAGACT TCTCTCCTCT CCACCCTTGT
  AAATGGTCTA GTGAAGGCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63332835	NES17507966	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48771809					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63332835	NES17507966	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88725992 () rs orientation: forward

Symbol	Name	Function Class
Gm13288	predicted gene 13288	mRNA-UTR
Rr595118	regulatory region 595118	1738 bp distal
Rr595119	regulatory region 595119	1592 bp distal
Rr595120	regulatory region 595120	1250 bp distal