rs48770491 SNP Detail

Summary

• ID
  rs48770491
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:97447389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAAACCCA GGAGCCTTGG
  GTTGTGGATA ACATCCTACT TTCTATTGGA CATTACAAAA GGGTCAGCAT AGTAATAGCT
  GTCTCTTGAT CATAGTGGCG CTTTAGGGAG TCTGCAAGTC CTAGATAGGA GGACCAGATC
  ATCGACACTT GCTGTGTAGA GGGGAAAGTT TTCTTTTTCT CCCAATATTC AGACATGCAA
  K
  GAGATCTCAT TCCTGGGGTA ACTGTACTAA TGAGTAGAAG AGGATTTAGC AAGCTCAGGT
  CTCACTGAAT TGAAGCCTCT GTGATCCATG CTCCATGTTA GGTGGTGATA AATTCTACAT
  AGAATTCTAA TAAGATAAAA TGCCCCCCTT TTTACTCAAA TTGAGTAAAG GGAGATATCA
  TTGAGTACCT ATGTTATACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MSM/Ms
ss61682494	NES17633317	PERLEGEN	MM_PANEL2	f	SNP			T		G	T
ss137979973	ENSMUSSNP444340	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	MSM/Ms
rs48770491					SNP	G	G	T	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61682494	NES17633317	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:97447389 () rs orientation: forward

Symbol	Name	Function Class
Rr387670	regulatory region 387670	505 bp downstream