rs48770103 SNP Detail

Summary

• ID
  rs48770103
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163552453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCATGTG TTCACTTCCC
  AGAGTGTGGG TTCCTCATGG TGTGGCAGCC TCTGGTTTCC TGTATTTCTT AACTGCTGGA
  GACAGGTATC CTAGGAGAGC CAGGTGGATG CTGTATGAGG TCCCCTAACT TCATCCTAGA
  GTCAGACACC ATCCTTCATT TTACGTTAGA CATCAGATAC TAGGGTATGG CTCAGTGATA
  W
  ATGGGAGGCC CTAAGCTGAA TCCCCAGCAC CTCCCAAAAA TGAAAGAGGA GGAAACGGAA
  GAAAAGGAAG AAAAGAAGTT CTAAAGCCAG CTCACAACGC ATCCAAAAGG ATTTAAATTA
  AGCCTCACAT CCCCTTCTGT ATTTTCTTGA TGGTACTGAA ACTTCAGCCC AGGACTGTGT
  TATGCTAGGC CAGTGGTTTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148209634	ENSMUSSNP6624967	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48770103					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163552453 () rs orientation: forward

Symbol	Name	Function Class
Pkig	protein kinase inhibitor, gamma	Intron
Rr569473	regulatory region 569473	247 bp proximal
Rr569474	regulatory region 569474	1844 bp proximal