rs48761435 SNP Detail

Summary

• ID
  rs48761435
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40461476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTAATATG TATAACTAAT
  TTTTCTATTC TTTGAAATAA AAAAGCCAAA CCACCTGAGG TCTTGGGACA ACCAAAACAG
  TTGAGTTTGT TTGGATAGCT AAGTCATAAC ATGATGCTCT ATTTTCTTTC AATTGACCTT
  GGAAATTATT GCGTACTTTC TTCAAGACTA CTTCCAAGCT CTCTTTCCCA CCTAGGCACA
  R
  GAGGAAAGAG CACCTTCCTT GGCATGAAAA GATGGCACCA TGAGTAACGT GCTTGCCGTA
  CATGAGTGAG AACAAGTGTC CCCAGAACCC ACATGAAAAC CTGGGAAGGT GTGAGAAGTT
  GCCTATAACC CCAGCTGGTG GCTGGTAGGA ATAAAGGTTC CTAGAACAAG CTGGCTAGCT
  AGAGTGTTCA CAATGATGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60393716	NES15889322	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48761435					SNP	A	A	A	A	A	A	A	A	A	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60393716	NES15889322	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40461476 () rs orientation: forward

Symbol	Name	Function Class
Rr575811	regulatory region 575811	1411 bp distal
Rr575812	regulatory region 575812	1637 bp proximal