rs48758934 SNP Detail

Summary

• ID
  rs48758934
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156956075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAATGATA GTCTTCTACC
  TTGACCCCAG CCTGGGAGCT ACCCCGACAC CCAGAAGAAA GAGTGACTGT GGCGTAGGAA
  GAGGGGTGGA AGGAGCCCCG CGTCCTCAGG CTGAAGGGAA GGCAGTTTGC CTCCCACAGT
  GCCCATGAAG CCAGTGTCAG TCCATGCCAG GACCACAGAG CCCAGCTTCG GGCCAGGCAG
  K
  GTAGGCCCTA CTGCTACATT TATACAAAGC TTCTTACCAC CGCTTCTGGG AGTCTTCAGT
  GCGTACCTGG CAAAATAATC CCATTTGTCT ACGTCGATGC CATTCCTCTT GTTAGACACT
  ATCTCGTAAA GGAAGCTCTT CGTGGCAGGG CGGCCTTTAT ACGGCCACTG GAAAACAAGA
  GAATCTCATG GAAGATTTAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148092144	ENSMUSSNP7192077	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
ss320584241	CHEV_2_156939891	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48758934					SNP	T	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156956075 () rs orientation: forward

Symbol	Name	Function Class
Rr568435	regulatory region 568435	784 bp proximal
Samhd1	SAM domain and HD domain, 1	Intron
Tssr27140	transcription start site region 27140	1620 bp upstream
Tssr27141	transcription start site region 27141	1291 bp upstream
Tssr27142	transcription start site region 27142	750 bp upstream
Tssr27143	transcription start site region 27143	122 bp downstream