rs48754950 SNP Detail

Summary

• ID
  rs48754950
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:67394646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGACTCCA GGCTAGCAGG
  GATAAAGTCT CTACTGATTC TATGCTTTGC CCTAAGTCCA CTACTGGAAC AGTATCAGAA
  TCAATATTTC TGTATTCTCG ACCATATTCC AAATGAAATA GTGAATAATA AATAACTGAT
  GGTTAAATAT GGTTATTAGT TTAAGCATAT TATGCCTATG AAGTAAAAAG GAAAAAGCAA
  W
  GAACAATGAG TGGTGTGGTA GAGAATTAAA GTGTTTGGGG TCTAAGAAGA TAGGAAATCA
  CTATTCAAAT AGGTCTTAAG GAATGTTGCA CTTTCTCCAG GACATGTATC TTCTCCACAC
  ATTCATGGAG GCATCAGTTG TCCTGGCTGA CTGTTAGAAA AGACTTGGAA AGTATCAAAT
  TATCTGGCTT GTAGTTTCCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146469593	ENSMUSSNP2873495	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48754950					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:67394646 () rs orientation: forward

Symbol	Name	Function Class
Rr593794	regulatory region 593794	704 bp proximal
Rr593795	regulatory region 593795	1168 bp proximal