rs48754798 SNP Detail

Summary

• ID
  rs48754798
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:148793491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTTCTAT GGAGGACAAG
  CCATCCCAGT TCTACTCCGG AGGTCAAAAT GTCCATCCTT GCCCCCGCCC TCCTAGACTG
  CACTTCAGCA CTTGCCCCCT TCACAGGGAA CGGTAAGAGT TTAATTATTT ACTAAAATTT
  GTGTGTCAGA AAATTCAAGC AGTTGAGCTG TGGAGAAAGC TCAGTGGATA AGGTGCTGGC
  R
  CAGGAGAGGA ACCACATTAG AAATCGGGGA AGGGGGTGAG GGCACACAAT CCCGGGTCCA
  GGAAGGTGGA GACAACTAGA ACCAGAGGCT CAGCTTACTT TTCCAGTTCC AGGCTGGACC
  CTGTCCCAAT AAACAAAGTG GAGGGGCACC TAGGGAGTCG TCCTCTGGCG CGTGAAACCC
  CACAACCACC GCCACCACGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61098057	NES16608514	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48754798					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61098057	NES16608514	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148793491 () rs orientation: forward

Symbol	Name	Function Class
Gm30575	predicted gene, 30575	within coordinates
Rr587258	regulatory region 587258	849 bp distal
Rr587259	regulatory region 587259	191 bp distal
Rr587260	regulatory region 587260	within coordinates
Rr587261	regulatory region 587261	568 bp proximal
Rr587262	regulatory region 587262	867 bp proximal
Rr587263	regulatory region 587263	1956 bp proximal