rs48753858 SNP Detail

Summary

• ID
  rs48753858
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135899507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTCTGACT CTCTTTCAAT
  GTTTGGCCCC ACCCCCAAGG AAAAGAGGTC CGCTCCTCAG CGCTCTTCGC TGTACTGTTG
  GTCCTTATGC TGGGTGTTCC AGATGCACCT CCTGCCTCAG TTTCGCCTAC TGTTACAAGA
  GGACGCTGAA GTCAGCAGAT GTCGCGGCCC CTTTAAGCCA CTAAGCTCCT GTCGTAATCG
  Y
  TGTTTCTTAG ACTAAGCCTT TCCGGGGGTG GGTGGGTGGG AGGAGCCTAT ATATATTGTA
  GCAGCCAATC GAGGCGCGGC ATTTTCCGCG GGAGATCCGA ATTTGGCGGC ATATAGTTTG
  GCGCTAAAAA AAAAAAAAAA GAAAAAAAAA AGAAAAAGAA AGAAAAAAGA AGAAAGAAAA
  GAAAAAGGAG TCCAAGCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147560408	ENSMUSSNP256839	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss321354363	CHEV_4_135728111	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48753858					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135899507 () rs orientation: forward

Symbol	Name	Function Class
E2f2	E2F transcription factor 2	198 bp upstream
Rr367754	regulatory region 367754	within coordinates
Rr602302	regulatory region 602302	within coordinates
Tssr39670	transcription start site region 39670	70 bp upstream
Tssr39671	transcription start site region 39671	171 bp upstream
Tssr39672	transcription start site region 39672	200 bp upstream
Tssr39673	transcription start site region 39673	232 bp upstream
Tssr39674	transcription start site region 39674	362 bp upstream
Tssr39675	transcription start site region 39675	470 bp upstream
Tssr39676	transcription start site region 39676	654 bp upstream
Tssr39677	transcription start site region 39677	749 bp upstream
Tssr39678	transcription start site region 39678	971 bp upstream
Tssr44029	transcription start site region 44029	122 bp downstream
Tssr44030	transcription start site region 44030	405 bp downstream
Tssr44031	transcription start site region 44031	842 bp downstream