rs48746719 SNP Detail

Summary

• ID
  rs48746719
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127622532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATCAGTT ACACTGGCAT
  GCTGTTCCTT TGTTCTAAAT CTACAACACC TTCTACCTTA GTGGTCATTT CAAAGAAAAA
  GGATGACCTT ACCAAAAGAC AATTATTATA CACTTCCCAA GCAGCTGACT TTTCATCTTA
  CATTAAGAAT TTATAACTTA ATGCTCTATA TCTGAACAAA CACAGCCAAC GGTGAAAGCC
  Y
  GGGGCGTGGA GAAACCATGA TATAGTTGCC TAAAACAAAC TGCCATGTTT AAATAAATCA
  ACCAAACTAA TCACAAGTAA AAGACACTAA GGCTGGCTTT ACTCAGGTCT TTTGAATCCT
  GTGTTTCACA AAGGCACAAG AGTTGCTTTC CTAAATTTAA GGAAAAAGAA GTCAGTATTT
  CACTGACTTG ATTTCCAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135872267	ENSMUSSNP1186032	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320957244	CHEV_3_127531801	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48746719					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127622532 () rs orientation: forward

Symbol	Name	Function Class
Ap1ar	adaptor-related protein complex 1 associated regulatory protein	Intron
Gm43654	predicted gene 43654	672 bp downstream
Rr584870	regulatory region 584870	1367 bp distal
Rr584871	regulatory region 584871	1336 bp proximal
Rr584872	regulatory region 584872	1926 bp proximal