rs48744269 SNP Detail

Summary

• ID
  rs48744269
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124922419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACCT CAGGGAGACA TCATTCGGCC
  Y
  ATAACACCCC ATTTCTCAGA TGGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145843940	ENSMUSSNP5203926	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48744269					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124922419 () rs orientation: forward

Symbol	Name	Function Class
Gm42054	predicted gene, 42054	873 bp upstream
Rr672636	regulatory region 672636	438 bp proximal
Rr672637	regulatory region 672637	1181 bp proximal
Tssr80021	transcription start site region 80021	1425 bp upstream
Tssr80022	transcription start site region 80022	1459 bp upstream