rs48742999 SNP Detail

Summary

• ID
  rs48742999
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135707965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAAGAACA CTGACTGCTC
  TTCTGTAGGT CCTGAGTTCA AATCCCAGCA ACCACATGGT AGCTCACAAC CACCCATAAT
  AAGATCTGAC GTCCTCTTCT GGTGCATCTG AAGACAGCTA CAGGGTACTT ATTTATTAAT
  AATAAATAAA TCTTTGGGTC AGAGCGTACA GGGACGGAGA GAGTGGGGTT GACTGGAGTC
  W
  ATGGGGTTGA CCGGAGTAAG CAGAAGTCCT AAATTCAATT CCTAACAACC ACATGAAGCC
  TCACAACCAT CTATCTGTAC ACCGTACAGC TATAGTGTAC TCATATACAT AAAATAAGCA
  GATAAATCTT TAAAAGAAGC TGCCAGTAAA GAAAATATTA ACTAACAAAT TCTGAAGCGC
  TCAGCTCCTA TCACTTCAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147555222	ENSMUSSNP4559117	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48742999					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135707965 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm69125	predicted gene, 69125			within coordinates
Pithd1	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1			Intron
				Noncoding-Transcript-Variant
Rr602230	regulatory region 602230			882 bp proximal
Rr602231	regulatory region 602231			1193 bp proximal