rs48742640 SNP Detail

Summary

• ID
  rs48742640
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146557318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTATAGGT AACTGCCAAT TTTCTTCTAG ATGGAGAGCT
  ATACAGTTGG TTGTTAACCA TTGTGTTCTG GAAACGTACG TGAGTCTGGC TGGGCACGAA
  Y
  TGTGGAAGTC AAAGAAATTT CATGCTTATG AACTTTCCCT ATCCTGTGAG GTTCATCTCA
  TGTGAGATAA CGATTATTTC CGGGTTACCA AGACAGTAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61097603	NES16606917	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48742640					SNP	C	C	C	C	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61097603	NES16606917	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146557318 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13925	CpG island 13925	567 bp proximal
Gm65628	predicted gene, 65628	within coordinates
Rr587096	regulatory region 587096	314 bp proximal
Rr587097	regulatory region 587097	815 bp proximal
Rr587098	regulatory region 587098	1093 bp proximal
Tssr32369	transcription start site region 32369	796 bp upstream
Ttll7	tubulin tyrosine ligase-like family, member 7	mRNA-UTR