rs48740697 SNP Detail

Summary

• ID
  rs48740697
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:61729529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTTTAAT CCATCCACTA
  GGCAGTAAAA TTTTAATTAC ATATATAAAA ACATAAAGAG TGCCTGTCAA ATACTACTCA
  GAAGATAAGG ACTGAAACTG TGGAGATAAT GGGACAGACC CATCAACCAC ACCATGGCTG
  TTGTAACTAT GCATGTGTAG CTCTGTCAAG CTCATCTATG TCTGAAAGAG TAAGAACTTA
  W
  CCACAGTAGA CACCTGGACT TTGTTGAAGC TTAAGAAATT GGTTGAGCAC TCACAGTGCA
  AGTGCAGCTA GGGCACGATT GCCCTCTACT GGCCAAGCTG AGTGTGGCAC TGTCTCCTAC
  AGCCAAACTG CTGGGGCTTC CTTTGTTTGT GCCTGTTAGG TTTATGCTCT GTGTATACAT
  ATTACATTTA TATGTATATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss146431326	ENSMUSSNP4919874	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs48740697					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:61729529 () rs orientation: forward

Symbol	Name	Function Class
Rr593236	regulatory region 593236	76 bp proximal