rs48739889 SNP Detail

Summary

• ID
  rs48739889
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:124019810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTAAGAAA GTTTAGAGCT
  CATTTGCCTG TGATACAAAT AGGATTCTAA TAACTACTAC TACTAACAAG AAAAAAGACA
  TAGTTTTAAT AGACTAAAGC TTCAGCAACT GAAGAGATGA CTCAGTGCTC AAGCAATTGT
  TCTTGCATAC GATCCAGGTT CCTCCCCAGG CACCCACAAA GTGGTTCACA ACCATCTGTA
  R
  CTAAAGTTCC ACGGGATCAG GTGCCCTCTT CTGTCCACTG TGGGCACTGC ACACATGCAG
  TGCACAGACA TACACGCAGG CAATGCTCGT ATTACACATA GAATAAAATA AACCTAAAAT
  AGAAGAAAAT TACAAAGAAT ATAGCTTTAG TTTTCCCATA ACTTTACCAC AAAATAATAA
  GTTTAAATCA CATCTTCATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135782595	ENSMUSSNP1565683	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320926408	CHEV_3_123929079	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48739889					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:124019810 () rs orientation: forward

Symbol	Name	Function Class
Rr584579	regulatory region 584579	18 bp proximal