rs48739054 SNP Detail

Summary

• ID
  rs48739054
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:7831623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCGTCTTCC TAGGCAGAGA
  TCACCCACAG CCACAAACAA GCCAATGTTT AGTTGAGGCA GTAGTTAGAC AGATTTGCTG
  CTAAACAGAT AGCTAAAAGG CAGAAGGCAA GAAACAAGAA TAAAGTAACT TTCTTTTACT
  CATTTCATGG TTGTGATGGT GGGGCCTTCC TCATCTCTTC TCAGATATGG CCCCAAATTA
  K
  TCATGCAAAC TCCCAGAGAT AAGTTATTAA AATGTTTTGC TTGTGCATCA GCCTAATTAG
  CATGAAATCT CATCCCACCC TGCTCCGTTT TTGTCTAGCA CATCAACAGT GTTCAAACCA
  CTTGCCCACT ACACACTTTA CAGCTATCTT GTCTGTCAGA TCACCACCAT ACACACTGCT
  CATCTTGAAG GACCACTCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132955756	ENSMUSSNP4102576	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48739054					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:7831623 () rs orientation: forward

Symbol	Name	Function Class
Rr626323	regulatory region 626323	465 bp distal