rs48738943 SNP Detail

Summary

• ID
  rs48738943
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:44072212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCG AGTGTCCAGA CAGTCAGAGT
  Y
  GGGCAAGCCT CCAAGAAGTC CCTCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146246407	ENSMUSSNP1933126	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321100042	CHEV_4_44085084	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48738943					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:44072212 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14207	CpG island 14207			within coordinates
Gne	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase			Intron
				Noncoding-Transcript-Variant
Rr591149	regulatory region 591149			within coordinates
Rr591150	regulatory region 591150			556 bp proximal
Rr591151	regulatory region 591151			764 bp proximal
Rr591152	regulatory region 591152			1511 bp proximal
Tssr41482	transcription start site region 41482			320 bp downstream
Tssr41483	transcription start site region 41483			366 bp downstream
Tssr41484	transcription start site region 41484			500 bp downstream
Tssr41485	transcription start site region 41485			804 bp downstream