rs48735300 SNP Detail

Summary

• ID
  rs48735300
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135579507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCATCCCT ATGGAGAGTT
  CCATCCCAGC CTTGGCTACA CGAGAGTCCA TCTCATAAAA AGACAGGCAA GGGAAGAGGG
  ATCCGAACCC AGCCAGCTTA CTGCTTGCTG CTCGGGCATG AGGACCTGGG CCACGCCTGT
  AAGCCCAGCA GAGACAGATC CCTGCCAGTT TGGCAGAATC TGATAGCTCT GGGTTCTATG
  R
  GCGGAACCCT CTGGAGACAT GCTGTACTTT CAGATATGTT TGCTCCTAAC GTAGCTAACG
  GGAATAAACT AAATTATAAT TAAGAATAGC TAAGGAATTA AACACCAAAA CCAAAAACCG
  GGTTGGCAAC ATGGCTTGGC CAGAAAGGTT GTCATGCAAG CCTGGATACC TCAGTTTGTT
  CCCCAGAACC TATGTAAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147552031	ENSMUSSNP3107838	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48735300					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135579507 () rs orientation: forward

Symbol	Name	Function Class
Gm13000	predicted gene 13000	1482 bp upstream
Gm69173	predicted gene, 69173	within coordinates
Rr602158	regulatory region 602158	within coordinates
Rr602159	regulatory region 602159	1807 bp proximal