rs48735152 SNP Detail

Summary

• ID
  rs48735152
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:78523159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGAGAAG CCAGAAGCGC
  CATTGTGATG CAGCGGGATG GGTGGAGCCA TCAAGTCTCA ATTTAGATCC CTCTGCTTTT
  AGGCGCGCCC ATTTCAGATT GCTAAACCCT GGTGTGAAGC GGGACAGGCC AGGGCAGGAG
  GTGGCCAACC ACACCCCGCA GGGCGCGCAC TTGGCGGGCT GCAGACCCCA CGGGCAGACG
  Y
  CGAGATGCGC AGTCGGAGGC TCCTGAGCGC GGCCCACCTT CTCTGCTTGT GCGCGGTCGC
  GCTGGCCGCC CCAGGGTAGG AGCGCGGGCT GGAGGGCGCC CGCGCAGGGG ATGCGCGCGG
  CATGTGGGAC CCGCCAGGGG GGCTTTCTTT AGGGTCCTTG TGCTGCGACA ACTTGTCAAA
  GAACGTCGTT CTAGCTGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ
ss61426858	NES16809511	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ
rs48735152					SNP	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61426858	NES16809511	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78523159 () rs orientation: forward

Symbol	Name	Function Class
Cd109	CD109 antigen	mRNA-UTR
Cpgi22073	CpG island 22073	within coordinates
Gm69315	predicted gene, 69315	220 bp upstream
Rr683597	regulatory region 683597	1281 bp distal
Rr683598	regulatory region 683598	321 bp distal
Rr683599	regulatory region 683599	within coordinates
Tssr86295	transcription start site region 86295	403 bp downstream
Tssr86296	transcription start site region 86296	384 bp downstream
Tssr86297	transcription start site region 86297	368 bp downstream
Tssr86298	transcription start site region 86298	134 bp downstream
Tssr86299	transcription start site region 86299	91 bp downstream
Tssr86300	transcription start site region 86300	68 bp downstream
Tssr86301	transcription start site region 86301	45 bp downstream
Tssr86302	transcription start site region 86302	within coordinates
Tssr90659	transcription start site region 90659	220 bp upstream