rs48731226 SNP Detail

Summary

• ID
  rs48731226
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151475081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAAAAGTC TGGTGTTTGC
  TTGGACAAAA TACATTCAGA CTCAGCACTC CCTTGTGTTT GTCAATTCTT GTCGACTCTT
  TGCCCATCTG TCTGAAACCC TGATTCCACA AGGAATGAGT GAGGCTGACT GGGCCCGGTC
  TGTGGCAGTA GAGCACTTTG AATGTTATAA AAATCATAAA TGTACTTATT TTATCAATAC
  R
  TGAACCCATA GATGAGTTCT TTACTGAACA TGCTGTTAGA AAGTAGTATG TAGATGGCGG
  AAGCAGGCCA CTGGTAATGG ACCTTGGAAG ACTTTATCTT GTCCCCAGCT CTCCTCAGGC
  ACCATGATAC AAGCAGTTCT GTTCCACAAT GCTCTCCTTG GCATGAGTTC AGCTGCCCCA
  CAAGCTCACA GATTATTATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss61100553	NES16600309	PERLEGEN	MM_PANEL2	f	SNP		A	G	A	A		A	A		A
ss136097987	ENSMUSSNP4018768	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss321026831	CHEV_3_151432408	CHEVERUD	SCREENING_POP	f	SNP						G			G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs48731226					SNP	G	A	G	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61100553	NES16600309	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151475081 () rs orientation: forward

Symbol	Name	Function Class
Rr587415	regulatory region 587415	1594 bp proximal
Rr587416	regulatory region 587416	1741 bp proximal
Rr587417	regulatory region 587417	1852 bp proximal