rs48731211 SNP Detail

Summary

• ID
  rs48731211
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:41365473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGGGCAT TGAATTCAAG
  TCAATAGGCT TGCGTAGAAG TATTTTACCT ACCGAGCTCT CTCTCCAGCC CTTTGACACA
  CCACCACCGT CATCACTATT GTTATCCTGA CCATTGAAGA ATGAGTCACT CATCAGAACG
  CAAGAAATCA GTCAGCCCTT TATCACCAGC TCGACCATAA TGAGGGTTAA TTTCTCCTTG
  R
  AACTGATTTG AAAGATAACA TAAACCATTA TCTTGGTCAT TATGGCATTT CCTCAGACTG
  GATTTTATTT TTCATGCAAA AGGAATTATG ATTTTTCTTC AATAAGACAG ATTTGGGTTT
  ACTTCCCGAA AGAGCCAGGA GAACAATGGA AATTTCATCT CTTGTCTGAG ACGGAACATT
  CAAACCAACA AGGGAACAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60398215	NES15902493	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48731211					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60398215	NES15902493	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41365473 () rs orientation: forward

Symbol	Name	Function Class
Gm66276	predicted gene, 66276	394 bp downstream
Rr374863	regulatory region 374863	1276 bp upstream
Rr575944	regulatory region 575944	1966 bp distal
Rr575945	regulatory region 575945	1341 bp distal
Rr575946	regulatory region 575946	1340 bp distal
Rr575947	regulatory region 575947	1756 bp proximal