rs48730474 SNP Detail

Summary

• ID
  rs48730474
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151476880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATCCTACT GGCAAGAGCA
  AAAGATCTAT AAAATGTTGC AGGAAATTAA TTAAAATTTG GTGTTAGAAA AATTTCATAG
  TAATAAATTT GGTCAGCAAG ATGTAGAGCT TTGACGTAAG ACACTGTGAC AGTAAAATAC
  CACAGATACA GCTATTGCAA CCGCAAAGGC TTACATAGCT GTACAGGCTG CGGGGCTAGA
  Y
  CACACCTGCT GTGGAGTCTG TTACCCAAGA AGCTGTCCCT TGCAGCTTCT CTCCACTGCC
  CTCTGCTGGC AAGGCTTAAC TACACATAGG TAAAGAAACC CATTTTAAAG CTTCAGCAAT
  GAAAAAAGGT ATGGAGTTGA AAGACAATAA ATTGACAACT AGAGATAGAA AAAGACAATA
  ATATTAATAA GGAAGAGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61100550	NES16600273	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48730474					SNP	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61100550	NES16600273	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151476880 () rs orientation: forward

Symbol	Name	Function Class
Rr587415	regulatory region 587415	184 bp distal
Rr587416	regulatory region 587416	within coordinates
Rr587417	regulatory region 587417	53 bp proximal