rs48729275 SNP Detail

Summary

• ID
  rs48729275
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:128877853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAGC ATCTTTCTAA TTCCTTTCTC
  Y
  TCTACTACAG TGATTCTAGT TGTAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147577536	ENSMUSSNP2842341	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss320503973	CHEV_2_128861669	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48729275					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128877853 () rs orientation: forward

Symbol	Name	Function Class
Gm54152	predicted gene, 54152	91 bp downstream
Rr564832	regulatory region 564832	252 bp distal
Vinac1	vinculin/alpha-catenin family member 1	Intron